Code

 
 
 
 
 
 
 
 
 
 

Murthy Lab Github Repository includes the following: 

Murthy Lab FlySongSegmenter
Code to combine signals from multiple microphones, and to segment courtship song into its three modes (sine, Pfast, and Pslow)

Pulse Type Classification
See Clemens et al. Current Biology 2018; code to separate courtship song pulses into Pfast and Pslow

no IPI cycles
Code and data from Stern et al. PNAS 2017

Drosophila virilis song analysis
GLMvirilis
and
Virilis Song Segmenter
Code for analyzing data in LaRue et al. eLife 2015

LEAP (LEAP Estimates Animal Pose)
C
ode for tracking animal body parts via deep learning: see Pereira*, Aldarondo* et al. Nature Methods 2018

Python Ball Motion Tracking (pybmt)

python code for tracking ball motion during head-fixed fly-on-the-ball experiments and delivering stimuli in closed-loop with ball motion - this is a python interface for running and using Richard Moore’s FicTrac

FLyTRAP

Code for tracking flies in an auditory playback assay: see Deutsch*, Clemens* et al. Current Biology 2019

GLMHMM

Code for running the Genearlized Linear Model (GLM) - Hidden Markov Model (HMM) implemented in Calhoun et al. bioRxiv 2019

DeepFlyTrack

Code for tracking fly centroids using deep networks: see Calhoun et al. bioRxiv 2019